GIST

• 2019-06-28
  A bash alias for Microsoft Excel (Mac only)

  bash      gist      excel      

• 2019-06-21
  Useful Nextflow bash functions for SLURM

  nextflow      gist      

• 2016-07-27
  memoise: Caching in the cloud

  gist      R      

• 2015-01-25
  Split a GFF File into Individual Features

  gff      gist      

• 2014-12-28
  Aggregate FastQC Reports

  bam      fastq      gist      

• 2014-12-15
  Downgrade a VCF for viewing in IGV (4.2 > 4.1)

  gist      vcf      

• 2014-12-05
  Rename Samples within a VCF/BCF

  bash      bcftools      gist      

• 2014-10-25
  From SRA Project to FASTQ

  fastq      gist      

• 2014-09-20
  Calculate Depth and Breadth of Coverage From a bam File

  bam      gist      

• 2014-09-15
  Generate a bedfile of masked ranges a fasta file

  FASTA      GIST      

• 2014-08-13
  Generate fasta sequence lengths

  FASTA      gist      

• 2014-08-02
  Visualizing Pairwise Queries in R

  gist      pubmed      

• 2014-05-30
  How to plot all of your Runkeeper Data

  cycling      gist      R      

• 2014-05-24
  Double Checking FASTQs

  fastq      gist      python      

• 2014-01-20
  Downloading and storing bioinformatic databases locally

  gist      python      

• 2013-11-09
  Export excel worksheets as individual CSVs

  excel      gist      

• 2013-11-03
  Fetch Data from UCSC Genome Browser

  gist      python      

• 2013-06-06
  A function for retrieving SNP data from Entrez using BioPython

  gist      

• 2013-01-09
  Django models for Chado

  Database      gist