A tool for writing TILs (Today I Learned)

nim      

You can walk to In-N-Out from LAX

tips      

Parallelize by iterating over chromosomal ranges

BAM      VCF      nim      seq-collection      

Calculate Insert Size Metrics Faster

VCF      nim      seq-collection      

From Pandas to Google Sheets

python      google-sheets      

Speeding up Reading and Writing in R

R      notebook      

Using GNU-Parallel for bioinformatics

bioinformatics      tutorial      bash      

Converting VCF To JSON

VCF      nim      seq-collection      

Setting the working directory in R

R      

A bash alias for Microsoft Excel (Mac only)

bash      gist      excel      

Useful Nextflow bash functions for SLURM

nextflow      gist      

Log commands to Google Cloud Stackdriver Logs

Bash      

Python Command-line skeleton

Python      

Introducing a Chicago Bioinformatics Slack Channel

Chicago      

Alfred Image Utilities

Alfred      

rdatastore

R      

A big list of favorites

Guitar Printouts

Guitar      

Quiver-alfred

Alfred      

memoise: Caching in the cloud

gist      R      

Automatically construct / infer / sense bigquery schema

bigquery      

Parallelize bcftools functions

VCF      

An Alfred workflow for generating markdown tables from your clipboard

Alfred      

Fetch Citations in Google Sheets using pubmed() function

Google-Sheets      

An Alfred Workflow for Wormbase

Alfred      

An Alfred Workflow for Codebox

Alfred      

HGNC Search: Instant search of human genes with Alfred

Alfred      Database      

An alfred workflow for working with sequence data

Alfred      Genetics      

Split a GFF File into Individual Features

gff      gist      

Aggregate FastQC Reports

bam      fastq      gist      

Downgrade a VCF for viewing in IGV (4.2 > 4.1)

gist      vcf      

Rename Samples within a VCF/BCF

bash      bcftools      gist      

From SRA Project to FASTQ

fastq      gist      

Calculate Depth and Breadth of Coverage From a bam File

bam      gist      

Generate a bedfile of masked ranges a fasta file

FASTA      GIST      

Generate fasta sequence lengths

FASTA      gist      

Visualizing Pairwise Queries in R

gist      pubmed      

A Short tour around Lake Michigan

cycling      

How to plot all of your Runkeeper Data

cycling      gist      R      

Where I Run and Bike in Chicago

CYCLING      chicago      

Double Checking FASTQs

fastq      gist      python      

Use Google Sheets to identify gene-disease associations in Pubmed

google-sheets      pubmed      

An R Function for Opening a dataframe in Excel (Mac Only)

excel      R      

Alfred Workflow for Creating a Data Analysis Project

Alfred      

Downloading and storing bioinformatic databases locally

gist      python      

Use Google to Find Lecture Notes

tips      

Export excel worksheets as individual CSVs

excel      gist      

Fetch Data from UCSC Genome Browser

gist      python      

Accessing the UCSC Genome Browser MySQL Database

SQL      

A function for retrieving SNP data from Entrez using BioPython

gist      

Create New File in Finder with Alfred 2

Alfred      

Excel Template for Mapping Four 96-Well Plates to One 384-Well Plate

excel      

Django models for Chado

Database      gist      

ccmatch: A stata program for matching cases and controls

stata